SEMplScores object and constructor

Constructs a SEMplScores class object.

Usage

SEMplScores(ranges = NULL, semData = NULL, scores = NULL)

Arguments

ranges

A GRanges or VRanges object to hold one or more variants

semData

A named list of SNPEffectMatrix objects

scores

(optional) A data.table object for motif information and binding scores

Value

a SEMplScores object

Examples

# load default SEMs
data(SEMC)

# create a VRanges object
vr <- VariantAnnotation::VRanges(
    seqnames = c("chr12", "chr19"),
    ranges = c(94136009, 10640062),
    ref = c("G", "T"), alt = c("C", "A")
)

SEMplScores(ranges = vr, semData = semData(SEMC))
#> An object of class SEMplScores
#> ranges(2): 
#> semData(12): transcription_factor, ensembl_id ... dnase_ENCODE_accession, PWM_source
#> scores(0):