Calculates binding enrichment for motif(s)

Perform a binomial test to determine if SNP Effect Matrices are bound more often than expected.

Usage

enrichSEMs(x, semList, background = NULL, seqs = NULL, nFlank = NULL)

x: The scoring table produced by scoreBinding
semList: A SNPEffectMatrix or SNPEffectMatrixCollection object
background: A list of DNA sequences to use for background. The length of each sequence must match the length of sequences in x. By default, will scramble the provided sequences.
seqs: The sequences scored in scoreBinding
nFlank: Number of flanking nucleotides added to the sequences. Defaults to the length of the longest motif. If no flanks were added (ie, sequences were scored rather than a GRanges), use nFlank = 0.

a list of matrices